📦 Software Tools by Pablo Monfort-Lanzas
A collection of web and code tools developed for computational toxicology, multi-omics integration, and biomedical research.
📈 DoseRider: Multi-omics Dose-Response Pathway Modeling
Models dose-response at the pathway level using mixed models with cubic splines. Supports transcriptomics and metabolomics. Outputs BMD and TCD values and offers pathway visualizations.
🧬 ExonSurfer: Primer Design at Exon Junctions
Web-based and Python-powered tool for designing transcript-specific primers. Features Docker support, Ensembl-based data, and integrated BLAST checks.
🧠MIO: MicroRNA Target Analysis for Immuno-Oncology
MIO enables bulk miRNA/mRNA analysis for cancer immuno-oncology via a user-friendly web interface and backend Python toolkit. Includes regularized regression, survival analysis, and curated immune signatures.
🧪 OVrSeq: RNA-Seq Analysis for Ovarian Cancer
 R package for immune profiling and HRD classification in ovarian cancer. Predicts BRCAness, immune infiltration, and therapy response using 24-gene signature and TCGA-trained models.
